A New Version of q-ary Varshamov-Tenengolts Codes with More Efficient Encoders: The Differential VT Codes and The Differential Shifted VT Codes (2311.04578v1)

Abstract: The problem of correcting deletions and insertions has recently received significantly increased attention due to the DNA-based data storage technology, which suffers from deletions and insertions with extremely high probability. In this work, we study the problem of constructing non-binary burst-deletion/insertion correcting codes. Particularly, for the quaternary alphabet, our designed codes are suited for correcting a burst of deletions/insertions in DNA storage. Non-binary codes correcting a single deletion or insertion were introduced by Tenengolts [1984], and the results were extended to correct a fixed-length burst of deletions or insertions by Schoeny et al. [2017]. Recently, Wang et al. [2021] proposed constructions of non-binary codes of length n, correcting a burst of length at most two for q-ary alphabets with redundancy log n+O(log q log log n) bits, for arbitrary even q. The common idea in those constructions is to convert non-binary sequences into binary sequences, and the error decoding algorithms for the q-ary sequences are mainly based on the success of recovering the corresponding binary sequences, respectively. In this work, we look at a natural solution in which the error detection and correction algorithms are performed directly over q-ary sequences, and for certain cases, our codes provide a more efficient encoder with lower redundancy than the best-known encoder in the literature.