Emergent Mind

Abstract

In this paper we give an algorithm for streaming $k$-edit approximate pattern matching which uses space $\widetilde{O}(k2)$ and time $\widetilde{O}(k2)$ per arriving symbol. This improves substantially on the recent algorithm of Kociumaka, Porat and Starikovskaya (2022) which uses space $\widetilde{O}(k5)$ and time $\widetilde{O}(k8)$ per arriving symbol. In the $k$-edit approximate pattern matching problem we get a pattern $P$ and text $T$ and we want to identify all substrings of the text $T$ that are at edit distance at most $k$ from $P$. In the streaming version of this problem both the pattern and the text arrive in a streaming fashion symbol by symbol and after each symbol of the text we need to report whether there is a current suffix of the text with edit distance at most $k$ from $P$. We measure the total space needed by the algorithm and time needed per arriving symbol.

We're not able to analyze this paper right now due to high demand.

Please check back later (sorry!).

Generate a summary of this paper on our Pro plan:

We ran into a problem analyzing this paper.

Newsletter

Get summaries of trending comp sci papers delivered straight to your inbox:

Unsubscribe anytime.