Generating Normal Networks via Leaf Insertion and Nearest Neighbor Interchange (1906.12053v3)

Abstract: Galled trees are studied as a recombination model in theoretic population genetics. This class of phylogenetic networks has been generalized to tree-child networks, normal networks and tree-based networks by relaxing a structural condition. Although these networks are simple, their topological structures have yet to be fully understood. It is well-known that all phylogenetic trees on $n$ taxa can be generated by the insertion of the $n$-th taxa to each edge of all the phylogenetic trees on $n-1$ taxa. We prove that all tree-child networks with $k$ reticulate nodes on $n$ taxa can be uniquely generated via three operations from all the tree-child networks with $k-1$ or $k$ reticulate nodes on $n-1$ taxa . An application of this result is found in counting tree-child networks and normal networks. In particular, a simple formula is given for the number of rooted phylogenetic networks with one reticulate node.