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Approximating Approximate Pattern Matching

Published 3 Oct 2018 in cs.DS | (1810.01676v3)

Abstract: Given a text TT of length nn and a pattern PP of length mm, the approximate pattern matching problem asks for computation of a particular \emph{distance} function between PP and every mm-substring of TT. We consider a (1±ε)(1\pm\varepsilon) multiplicative approximation variant of this problem, for ℓp\ell_p distance function. In this paper, we describe two (1+ε)(1+\varepsilon)-approximate algorithms with a runtime of O~(nε)\widetilde{O}(\frac{n}{\varepsilon}) for all (constant) non-negative values of pp. For constant p≥1p \ge 1 we show a deterministic (1+ε)(1+\varepsilon)-approximation algorithm. Previously, such run time was known only for the case of ℓ1\ell_1 distance, by Gawrychowski and Uzna\'nski [ICALP 2018] and only with a randomized algorithm. For constant 0≤p≤10 \le p \le 1 we show a randomized algorithm for the ℓp\ell_p, thereby providing a smooth tradeoff between algorithms of Kopelowitz and Porat [FOCS~2015, SOSA~2018] for Hamming distance (case of p=0p=0) and of Gawrychowski and Uzna\'nski for ℓ1\ell_1 distance.

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