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Deep learning enhanced mobile-phone microscopy (1712.04139v1)

Published 12 Dec 2017 in cs.LG, cs.CV, and physics.med-ph

Abstract: Mobile-phones have facilitated the creation of field-portable, cost-effective imaging and sensing technologies that approach laboratory-grade instrument performance. However, the optical imaging interfaces of mobile-phones are not designed for microscopy and produce spatial and spectral distortions in imaging microscopic specimens. Here, we report on the use of deep learning to correct such distortions introduced by mobile-phone-based microscopes, facilitating the production of high-resolution, denoised and colour-corrected images, matching the performance of benchtop microscopes with high-end objective lenses, also extending their limited depth-of-field. After training a convolutional neural network, we successfully imaged various samples, including blood smears, histopathology tissue sections, and parasites, where the recorded images were highly compressed to ease storage and transmission for telemedicine applications. This method is applicable to other low-cost, aberrated imaging systems, and could offer alternatives for costly and bulky microscopes, while also providing a framework for standardization of optical images for clinical and biomedical applications.

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Authors (11)
  1. Yair Rivenson (41 papers)
  2. Hatice Ceylan Koydemir (8 papers)
  3. Hongda Wang (13 papers)
  4. Zhensong Wei (9 papers)
  5. Zhengshuang Ren (1 paper)
  6. Harun Gunaydin (5 papers)
  7. Yibo Zhang (41 papers)
  8. Zoltan Gorocs (4 papers)
  9. Kyle Liang (3 papers)
  10. Derek Tseng (3 papers)
  11. Aydogan Ozcan (125 papers)
Citations (164)

Summary

  • The paper introduces a deep learning methodology that uses convolutional neural networks to correct optical distortions in mobile-phone microscope images, improving resolution, signal-to-noise ratio, and color accuracy.
  • Applying this method resulted in significant quantitative improvements, such as increasing the Structural Similarity Index (SSIM) from 0.4956 to 0.7020 for certain inputs, demonstrating enhanced image quality.
  • This approach allows low-cost mobile devices to achieve image quality comparable to high-end benchtop microscopes, offering a potential paradigm shift for clinical applications and telemedicine in resource-limited settings.

Deep Learning Enhanced Mobile-Phone Microscopy

The paper entitled "Deep learning enhanced mobile-phone microscopy" discusses the development of an advanced methodology to improve the image quality produced by mobile-phone-based microscopes via deep learning techniques. This work addresses a significant limitation inherent in mobile microscopy: the optical components of smartphones are not optimized for microscopic imaging, resulting in spatial and spectral distortions. The authors present a solution involving deep learning to correct these distortions, enabling mobile-phone microscopes to produce high-resolution, denoised, and color-corrected images comparable to those from high-end benchtop microscopes.

Technical Summary

The authors employed convolutional neural network (CNN) architectures to learn statistical transformations between images from mobile microscopes and benchtop microscopes, effectively correcting distortions without needing complex physical degradation models. Various samples, including blood smears and histopathology tissue sections, were successfully imaged with performance matching benchtop devices using a trained deep network.

The methodology consists of training a CNN using paired images—smartphone microscope images under distortion and gold standard images from benchtop microscopes. After the training phase, the network operates in a feed-forward manner to enhance images regarding resolution, signal-to-noise ratio, and color accuracy. Noteworthy is that this enhancement persists even when subjected to high compression levels ideal for telemedicine applications, facilitating ease of storage and sharing.

Results

Significant improvements in image quality were observed when applying this deep learning framework. For instance, quantitative assessments such as the Structural Similarity Index (SSIM) showed substantial enhancement, with SSIM indices demonstrating increases from 0.4956 to 0.7020 when using the CNN for TIFF format inputs. Moreover, color accuracy saw improvement where CIE-94 color distances were reduced significantly across various sample types, indicating successful color correction.

The implementation of this method showed promising results not only qualitatively but quantitatively, with CNNs providing improved image sharpness and details that otherwise would be difficult to discern in raw smartphone images.

Implications and Future Directions

The implications of this research are profound in the context of global health and resource-limited environments. The ability to utilize cost-effective mobile devices to achieve high-quality imaging equivalent to benchtop instruments is a paradigm shift. This approach offers a potential path to standardize optical images in clinical applications, addressing discrepancies in diagnostic analysis.

Future work could expand this methodology to encompass a broader range of sample types or employ universal network models to manage diverse datasets. The reduction in computational complexity implies potential for real-time processing directly on mobile devices, which could further democratize access to advanced diagnostic tools.

This research exemplifies the transformative power of neural networks in enhancing imaging capabilities in practical scenarios, paving the way for further developments in telemedicine, portable diagnostics, and beyond, without the need for expensive equipment or infrastructure.